Stanislaw Dunin-Horkawicz

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Janusz BujnickiProfessor of Biology, International Institute of Molecular and Cell Biology in WarsawVerified email at genesilico.pl
Andrei LupasDirector of the Department of Protein Evolution, Max-Planck-Institute for Developmental BiologyVerified email at tuebingen.mpg.de
Magdalena MachnickaInstitute of Informatics, University of WarsawVerified email at mimuw.edu.pl
Jan LudwiczakCentre of New Technologies, University of WarsawVerified email at cent.uw.edu.pl
Kornelius ZethRoskilde University, Department of Science and EnvironmentVerified email at ruc.dk
Katarzyna H. KaminskaWarsaw University of TechnologyVerified email at tele.pw.edu.pl
Krzysztof SzczepaniakMałopolska Centre of BiotechnologyVerified email at uj.edu.pl
Marcus HartmannMax Planck Institute for Developmental BiologyVerified email at tuebingen.mpg.de
ANNA CZERWONIECBioinformatics Laboratory, IMBB, Adam Mickiewicz University; VitaInSilica Sp. z o.o.Verified email at amu.edu.pl
Kaja Milanowska-ZabelArdigenVerified email at ardigen.com
Witold JanuszewskiComputational Transcriptomics Group, Institute of Biology III, Albert Ludwig University of FreiburgVerified email at biologie.uni-freiburg.de
Aleksander WińskiUniwersytet WarszawskiVerified email at cent.uw.edu.pl
Birte Hernandez AlvarezMax Planck Institue for Developmental Biology, Dept. Protein EvolutionVerified email at tuebingen.mpg.de
Karolina L. TkaczukSano Center for Computational MedicineVerified email at sanoscience.org
Joachim SchultzProf. Pharmaceutical ChemistryVerified email at uni-tuebingen.de
Vikram AlvaMax Planck Institute for Developmental BiologyVerified email at tuebingen.mpg.de
Marcin MagnusInternational Institute of Molecular Mechanisms and Machines (IMol), PolandVerified email at imol.institute
Michał BonieckiInternational Institute of Molecular and Cell Biology in WarsawVerified email at genesilico.pl
Anna MuszewskaInstitute of Biochemistry and Biophysics, Polish Academy of SciencesVerified email at ibb.waw.pl
Grzegorz ChojnowskiEMBL HamburgVerified email at embl-hamburg.de

Stanislaw Dunin-Horkawicz

University of Warsaw, Institute of Evolutionary Biology

Verified email at uw.edu.pl - Homepage

coiled coils protein evolution comparative genomics machine learning in structural biology


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MODOMICS: a database of RNA modification pathways—2013 update MA Machnicka, K Milanowska, O Osman Oglou, E Purta, M Kurkowska, ... Nucleic acids research 41 (D1), D262-D267, 2012	971	2012
MODOMICS: a database of RNA modification pathways S Dunin-Horkawicz, A Czerwoniec, MJ Gajda, M Feder, H Grosjean, ... Nucleic acids research 34 (suppl_1), D145-D149, 2006	251	2006
MODOMICS: a database of RNA modification pathways. 2008 update A Czerwoniec, S Dunin-Horkawicz, E Purta, KH Kaminska, JM Kasprzak, ... Nucleic acids research 37 (suppl_1), D118-D121, 2009	240	2009
Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases KL Tkaczuk, S Dunin-Horkawicz, E Purta, JM Bujnicki BMC bioinformatics 8 (1), 1-31, 2007	161	2007
RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ... Rna 21 (6), 1066-1084, 2015	154	2015
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ... Rna 23 (5), 655-672, 2017	151	2017
The RNase H-like superfamily: new members, comparative structural analysis and evolutionary classification KA Majorek, S Dunin-Horkawicz, K Steczkiewicz, A Muszewska, ... Nucleic acids research 42 (7), 4160-4179, 2014	122	2014
Phylogenomic analysis of the GIY-YIG nuclease superfamily S Dunin-Horkawicz, M Feder, JM Bujnicki BMC genomics 7 (1), 1-19, 2006	111	2006
Rational design of helical nanotubes from self-assembly of coiled-coil lock washers C Xu, R Liu, AK Mehta, RC Guerrero-Ferreira, ER Wright, ... Journal of the American Chemical Society 135 (41), 15565-15578, 2013	108	2013
The mechanisms of HAMP-mediated signaling in transmembrane receptors HU Ferris, S Dunin-Horkawicz, LG Mondéjar, M Hulko, K Hantke, J Martin, ... Structure 19 (3), 378-385, 2011	108	2011
Mechanism of regulation of receptor histidine kinases HU Ferris, S Dunin-Horkawicz, N Hornig, M Hulko, J Martin, JE Schultz, ... Structure 20 (1), 56-66, 2012	107	2012
Comprehensive analysis of HAMP domains: implications for transmembrane signal transduction S Dunin-Horkawicz, AN Lupas Journal of molecular biology 397 (5), 1156-1174, 2010	95	2010
A coiled-coil motif that sequesters ions to the hydrophobic core MD Hartmann, O Ridderbusch, K Zeth, R Albrecht, O Testa, DN Woolfson, ... Proceedings of the National Academy of Sciences 106 (40), 16950-16955, 2009	89	2009
DeepCoil—a fast and accurate prediction of coiled-coil domains in protein sequences J Ludwiczak, A Winski, K Szczepaniak, V Alva, S Dunin-Horkawicz Bioinformatics 35 (16), 2790-2795, 2019	83	2019
The structure and topology of α-helical coiled coils AN Lupas, J Bassler, S Dunin-Horkawicz Fibrous Proteins: Structures and Mechanisms, 95-129, 2017	62	2017
Axial helix rotation as a mechanism for signal regulation inferred from the crystallographic analysis of the E. coli serine chemoreceptor HU Ferris, K Zeth, M Hulko, S Dunin-Horkawicz, AN Lupas Journal of structural biology 186 (3), 349-356, 2014	56	2014
The yfhQ gene of Escherichia coli encodes a tRNA: Cm32/Um32 methyltransferase E Purta, F Van Vliet, KL Tkaczuk, S Dunin-Horkawicz, H Mori, ... BMC molecular biology 7 (1), 1-13, 2006	55	2006
Complete fiber structures of complex trimeric autotransporter adhesins conserved in enterobacteria MD Hartmann, I Grin, S Dunin-Horkawicz, S Deiss, D Linke, AN Lupas, ... Proceedings of the National Academy of Sciences 109 (51), 20907-20912, 2012	53	2012
Computational modeling of RNA 3D structures, with the aid of experimental restraints M Magnus, D Matelska, G Łach, G Chojnowski, MJ Boniecki, E Purta, ... RNA biology 11 (5), 522-536, 2014	47	2014
A transition from strong right-handed to canonical left-handed supercoiling in a conserved coiled-coil segment of trimeric autotransporter adhesins BH Alvarez, M Gruber, A Ursinus, S Dunin-Horkawicz, AN Lupas, K Zeth Journal of structural biology 170 (2), 236-245, 2010	43	2010

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