Vishnu Dileep
Vishnu Dileep
Post-Doctoral Associate (Tsai Lab), Picower Institute for Learning and Memory, MIT
Verified email at
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Topologically associating domains are stable units of replication-timing regulation
BD Pope, T Ryba, V Dileep, F Yue, W Wu, O Denas, DL Vera, Y Wang, ...
Nature 515 (7527), 402-405, 2014
Mouse Rif1 is a key regulator of the replication‐timing programme in mammalian cells
D Cornacchia, V Dileep, JP Quivy, R Foti, F Tili, R Santarella‐Mellwig, ...
The EMBO journal 31 (18), 3678-3690, 2012
Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program
V Dileep, F Ay, J Sima, DL Vera, WS Noble, DM Gilbert
Genome research 25 (8), 1104-1113, 2015
Integrative detection and analysis of structural variation in cancer genomes
JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le, GG Yardımcı, ...
Nature genetics 50 (10), 1388-1398, 2018
Nuclear architecture organized by Rif1 underpins the replication-timing program
R Foti, S Gnan, D Cornacchia, V Dileep, A Bulut-Karslioglu, S Diehl, ...
Molecular cell 61 (2), 260-273, 2016
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
Identifying cis elements for spatiotemporal control of mammalian DNA replication
J Sima, A Chakraborty, V Dileep, M Michalski, KN Klein, NP Holcomb, ...
Cell 176 (4), 816-830. e18, 2019
Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding
S Takebayashi, V Dileep, T Ryba, JH Dennis, DM Gilbert
Proceedings of the National Academy of Sciences 109 (31), 12574-12579, 2012
Large-scale chromatin structure–function relationships during the cell cycle and development: insights from replication timing
V Dileep, JC Rivera-Mulia, J Sima, DM Gilbert
Cold Spring Harbor symposia on quantitative biology 80, 53-63, 2015
Single-cell replication profiling to measure stochastic variation in mammalian replication timing
V Dileep, DM Gilbert
Nature communications, 2018
Murine esBAF chromatin remodeling complex subunits BAF250a and Brg1 are necessary to maintain and reprogram pluripotency-specific replication timing of select replication domains
S Takebayashi, I Lei, T Ryba, T Sasaki, V Dileep, D Battaglia, X Gao, ...
Epigenetics & chromatin 6 (1), 1-12, 2013
An integrative ENCODE resource for cancer genomics
J Zhang, D Lee, V Dhiman, P Jiang, J Xu, P McGillivray, H Yang, J Liu, ...
Nature communications 11 (1), 1-11, 2020
Rapid irreversible transcriptional reprogramming in human stem cells accompanied by discordance between replication timing and chromatin compartment
V Dileep, KA Wilson, C Marchal, X Lyu, PA Zhao, B Li, A Poulet, ...
Stem cell reports 13 (1), 193-206, 2019
Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble
A Marco, HS Meharena, V Dileep, RM Raju, J Davila-Velderrain, ...
Nature Neuroscience 23 (12), 1606-1617, 2020
Genome-wide analysis of replication timing in mammalian cells: troubleshooting problems encountered when comparing different cell types
V Dileep, R Didier, DM Gilbert
Methods 57 (2), 165-169, 2012
The place and function of non-coding DNA in the evolution of variability
V Dileep
Hypothesis 7 (1), e7, 2009
High throughput genome-wide single cell protein: DNA binding site mapping by targeted insertion of promoters (TIP-seq)
DA Bartlett, V Dileep, S Henikoff, DM Gilbert
bioRxiv, 2021
Replication Timing Regulation and Chromatin Structure Dynamics during the Cell Cycle and Development
V Dileep
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