Kathi Zarnack
Kathi Zarnack
Buchmann Institute for Molecular Life Sciences (BMLS)
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iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
J König, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ...
Nature structural & molecular biology 17 (7), 909-915, 2010
Direct Competition between hnRNP C and U2AF65 Protects the Transcriptome from the Exonization of< i> Alu</i> Elements
K Zarnack, J König, M Tajnik, I Martincorena, S Eustermann, I Stévant, ...
Cell 152 (3), 453-466, 2013
Protein–RNA interactions: new genomic technologies and perspectives
J König, K Zarnack, NM Luscombe, J Ule
Nature Reviews Genetics 13 (2), 77-83, 2012
SR proteins are NXF1 adaptors that link alternative RNA processing to mRNA export
M Müller-McNicoll, V Botti, AM de Jesus Domingues, H Brandl, ...
Genes & Development 30 (5), 553-566, 2016
Analysis of alternative splicing associated with aging and neurodegeneration in the human brain
JR Tollervey, Z Wang, T Hortobágyi, JT Witten, K Zarnack, M Kayikci, ...
Genome research 21 (10), 1572-1582, 2011
iCLIP predicts the dual splicing effects of TIA-RNA interactions
Z Wang, M Kayikci, M Briese, K Zarnack, NM Luscombe, G Rot, B Zupan, ...
PLoS Biol 8 (10), e1000530, 2010
iCLIP-Transcriptome-wide Mapping of Protein-RNA Interactions with Individual Nucleotide Resolution
J Konig, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ...
Journal of visualized experiments: JoVE, 2011
The RNA-binding protein HuR is essential for the B cell antibody response
MD Diaz-Muñoz, SE Bell, K Fairfax, E Monzon-Casanova, ...
Nature immunology 16 (4), 415-425, 2015
The fungal RNA-binding protein Rrm4 mediates long-distance transport of ubi1 and rho3 mRNAs
J König, S Baumann, J Koepke, T Pohlmann, K Zarnack, M Feldbrügge
The EMBO journal 28 (13), 1855-1866, 2009
Insights into the design and interpretation of iCLIP experiments
N Haberman, I Huppertz, J Attig, J König, Z Wang, C Hauer, MW Hentze, ...
Genome Biology 18 (1), 7, 2017
In vitro iCLIP-based modeling uncovers how the splicing factor U2AF2 relies on regulation by cofactors
FXR Sutandy, S Ebersberger, L Huang, A Busch, M Bach, HS Kang, ...
Genome research 28 (5), 699-713, 2018
Membrane-associated RNA-binding proteins orchestrate organelle-coupled translation
J Béthune, RP Jansen, M Feldbrügge, K Zarnack
Trends in cell biology 29 (2), 178-188, 2019
Tetracycline-regulated gene expression in the pathogen< i> Ustilago maydis</i>
K Zarnack, S Maurer, F Kaffarnik, O Ladendorf, A Brachmann, J Kämper, ...
Fungal Genetics and Biology 43 (11), 727-738, 2006
The RNA-binding protein Rrm4 is essential for efficient secretion of endochitinase Cts1
J Koepke, F Kaffarnik, C Haag, K Zarnack, NM Luscombe, J König, J Ule, ...
Molecular & Cellular Proteomics 10 (12), M111. 011213, 2011
Pheromone‐regulated target genes respond differentially to MAPK phosphorylation of transcription factor Prf1
K Zarnack, H Eichhorn, R Kahmann, M Feldbrügge
Molecular microbiology 69 (4), 1041-1053, 2008
Splicing repression allows the gradual emergence of new Alu-exons in primate evolution
J Attig, IR de los Mozos, N Haberman, Z Wang, W Emmett, K Zarnack, ...
eLife 5, e19545, 2016
Cellular differentiation state modulates the mRNA export activity of SR proteins
V Botti, F McNicoll, MC Steiner, FM Richter, A Solovyeva, M Wegener, ...
Journal of Cell Biology 216 (7), 1993-2009, 2017
mRNA trafficking in fungi
K Zarnack, M Feldbrügge
Molecular Genetics and Genomics 278 (4), 347-359, 2007
Deep and accurate detection of m6A RNA modifications using miCLIP2 and m6Aboost machine learning
N Körtel, C Rücklé, Y Zhou, A Busch, P Hoch-Kraft, FXR Sutandy, J Haase, ...
Nucleic acids research 49 (16), e92-e92, 2021
Control of a neuronal morphology program by an RNA-binding zinc finger protein, Unkempt
J Murn, K Zarnack, YJ Yang, O Durak, EA Murphy, S Cheloufi, ...
Genes & Development 29 (5), 501-512, 2015
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