| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 2017 | 505 | 2017 |
| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 419* | 2019 |
| Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410-422, 2018 | 244 | 2018 |
| MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins DT Jones, T Singh, T Kosciolek, S Tetchner Bioinformatics 31 (7), 999-1006, 2015 | 226 | 2015 |
| American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... MSystems 3 (3), e00031-18, 2018 | 105* | 2018 |
| De novo structure prediction of globular proteins aided by sequence variation-derived contacts T Kosciolek, DT Jones PloS one 9 (3), 2014 | 87 | 2014 |
| Qiita: rapid, web-enabled microbiome meta-analysis A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ... Nature methods 15 (10), 796-798, 2018 | 81 | 2018 |
| Overview and systematic review of studies of microbiome in schizophrenia and bipolar disorder TT Nguyen, T Kosciolek, LT Eyler, R Knight, DV Jeste Journal of psychiatric research 99, 50-61, 2018 | 54 | 2018 |
| Accurate contact predictions using covariation techniques and machine learning T Kosciolek, DT Jones Proteins: Structure, Function, and Bioinformatics 84, 145-151, 2016 | 45 | 2016 |
| Protein binding site analysis by means of structural interaction fingerprint patterns S Mordalski, T Kosciolek, K Kristiansen, I Sylte, AJ Bojarski Bioorganic & medicinal chemistry letters 21 (22), 6816-6819, 2011 | 38 | 2011 |
| Impact of template choice on homology model efficiency in virtual screening K Rataj, J Witek, S Mordalski, T Kosciolek, AJ Bojarski Journal of chemical information and modeling 54 (6), 1661-1668, 2014 | 33 | 2014 |
| Differences in gut microbiome composition between persons with chronic schizophrenia and healthy comparison subjects TT Nguyen, T Kosciolek, Y Maldonado, RE Daly, AS Martin, D McDonald, ... Schizophrenia research 204, 23-29, 2019 | 26 | 2019 |
| Gut microbiome and magnetic resonance spectroscopy study of subjects at ultra-high risk for psychosis may support the membrane hypothesis Y He, T Kosciolek, J Tang, Y Zhou, Z Li, X Ma, Q Zhu, N Yuan, L Yuan, ... European Psychiatry 53, 37-45, 2018 | 21 | 2018 |
| Gut instinct: Creating scientific theories with online learners V Pandey, A Amir, J Debelius, ER Hyde, T Kosciolek, R Knight, ... Proceedings of the 2017 CHI conference on human factors in computing systems …, 2017 | 16 | 2017 |
| Opportunities and limitations in applying coevolution-derived contacts to protein structure prediction S Tetchner, T Kosciolek, DT Jones Bio-Algorithms and Med-Systems 10 (4), 243-254, 2014 | 10 | 2014 |
| IL-4Rα blockade by dupilumab decreases Staphylococcus aureus colonization and increases microbial diversity in atopic dermatitis C Callewaert, T Nakatsuji, R Knight, T Kosciolek, A Vrbanac, P Kotol, ... Journal of Investigative Dermatology 140 (1), 191-202. e7, 2020 | 8 | 2020 |
| Predictions of backbone dynamics in intrinsically disordered proteins using de novo fragment-based protein structure predictions T Kosciolek, DWA Buchan, DT Jones Scientific reports 7 (1), 1-12, 2017 | 7 | 2017 |
| The impact of skin care products on skin chemistry and microbiome dynamics A Bouslimani, R da Silva, T Kosciolek, S Janssen, C Callewaert, A Amir, ... BMC biology 17 (1), 47, 2019 | 5 | 2019 |
| Docent: transforming personal intuitions to scientific hypotheses through content learning and process training V Pandey, J Debelius, ER Hyde, T Kosciolek, R Knight, S Klemmer Proceedings of the Fifth Annual ACM Conference on Learning at Scale, 1-10, 2018 | 5 | 2018 |
| Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ... Nature communications 10 (1), 1-14, 2019 | 3 | 2019 |
Rob KnightDirector, Center for Microbiome Innovation; Professor, Pediatrics, Bioengineering and CSE, UCSDVerified email at ucsd.edu
