| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 2017 | 341 | 2017 |
| MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins DT Jones, T Singh, T Kosciolek, S Tetchner Bioinformatics 31 (7), 999-1006, 2014 | 200 | 2014 |
| Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410, 2018 | 111 | 2018 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 106 | 2018 |
| De novo structure prediction of globular proteins aided by sequence variation-derived contacts T Kosciolek, DT Jones PloS one 9 (3), e92197, 2014 | 82 | 2014 |
| American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... mSystems 3 (3), e00031-18, 2018 | 52 | 2018 |
| Qiita: rapid, web-enabled microbiome meta-analysis A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ... Nature methods 15 (10), 796, 2018 | 42 | 2018 |
| Accurate contact predictions using covariation techniques and machine learning T Kosciolek, DT Jones Proteins: Structure, Function, and Bioinformatics 84, 145-151, 2016 | 41 | 2016 |
| Protein binding site analysis by means of structural interaction fingerprint patterns S Mordalski, T Kosciolek, K Kristiansen, I Sylte, AJ Bojarski Bioorganic & medicinal chemistry letters 21 (22), 6816-6819, 2011 | 37 | 2011 |
| Overview and systematic review of studies of microbiome in schizophrenia and bipolar disorder TT Nguyen, T Kosciolek, LT Eyler, R Knight, DV Jeste Journal of psychiatric research 99, 50-61, 2018 | 34 | 2018 |
| Impact of template choice on homology model efficiency in virtual screening K Rataj, J Witek, S Mordalski, T Kosciolek, AJ Bojarski Journal of chemical information and modeling 54 (6), 1661-1668, 2014 | 29 | 2014 |
| Differences in gut microbiome composition between persons with chronic schizophrenia and healthy comparison subjects TT Nguyen, T Kosciolek, Y Maldonado, RE Daly, AS Martin, D McDonald, ... Schizophrenia research 204, 23-29, 2019 | 11 | 2019 |
| Gut microbiome and magnetic resonance spectroscopy study of subjects at ultra-high risk for psychosis may support the membrane hypothesis Y He, T Kosciolek, J Tang, Y Zhou, Z Li, X Ma, Q Zhu, N Yuan, L Yuan, ... European Psychiatry 53, 37-45, 2018 | 11 | 2018 |
| Gut instinct: Creating scientific theories with online learners V Pandey, A Amir, J Debelius, ER Hyde, T Kosciolek, R Knight, ... Proceedings of the 2017 CHI conference on human factors in computing systems …, 2017 | 11 | 2017 |
| American Gut: an open platform for citizen science microbiome research. mSystems 3: e00031-18 D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... | 10 | 2018 |
| Opportunities and limitations in applying coevolution-derived contacts to protein structure prediction S Tetchner, T Kosciolek, DT Jones Bio-Algorithms and Med-Systems 10 (4), 243-254, 2014 | 9 | 2014 |
| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology, 1, 2019 | 5 | 2019 |
| Predictions of backbone dynamics in intrinsically disordered proteins using de novo fragment-based protein structure predictions T Kosciolek, DWA Buchan, DT Jones Scientific reports 7 (1), 6999, 2017 | 5 | 2017 |
| Docent: transforming personal intuitions to scientific hypotheses through content learning and process training V Pandey, J Debelius, ER Hyde, T Kosciolek, R Knight, S Klemmer Proceedings of the Fifth Annual ACM Conference on Learning at Scale, 9, 2018 | 4 | 2018 |
| Design and synthesis of novel cannabinoid ligands based on a 1, 2, 3-triazole scaffold P W Szafranski, K Dyduch, T Kosciolek, T P Wrobel, M Gomez-Canas, ... Letters in Drug Design & Discovery 10 (2), 169-172, 2013 | 3 | 2013 |
Rob KnightProfessor of Pediatrics, Bioengineering and Computer Science & Engineering, UC San DiegoVerified email at ucsd.edu