Tomasz Kościółek
Tomasz Kościółek
Jagiellonian University, Małopolska Centre of Biotechnology
Verified email at uj.edu.pl - Homepage
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
900*2019
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 2017
6422017
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
3422018
MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins
DT Jones, T Singh, T Kosciolek, S Tetchner
Bioinformatics 31 (7), 999-1006, 2015
2432015
American Gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), e00031-18, 2018
149*2018
Qiita: rapid, web-enabled microbiome meta-analysis
A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ...
Nature methods 15 (10), 796-798, 2018
1102018
De novo structure prediction of globular proteins aided by sequence variation-derived contacts
T Kosciolek, DT Jones
PloS one 9 (3), e92197, 2014
942014
Overview and systematic review of studies of microbiome in schizophrenia and bipolar disorder
TT Nguyen, T Kosciolek, LT Eyler, R Knight, DV Jeste
Journal of psychiatric research 99, 50-61, 2018
712018
Accurate contact predictions using covariation techniques and machine learning
T Kosciolek, DT Jones
Proteins: Structure, Function, and Bioinformatics 84, 145-151, 2016
482016
Protein binding site analysis by means of structural interaction fingerprint patterns
S Mordalski, T Kosciolek, K Kristiansen, I Sylte, AJ Bojarski
Bioorganic & medicinal chemistry letters 21 (22), 6816-6819, 2011
392011
Impact of template choice on homology model efficiency in virtual screening
K Rataj, J Witek, S Mordalski, T Kosciolek, AJ Bojarski
Journal of chemical information and modeling 54 (6), 1661-1668, 2014
352014
Differences in gut microbiome composition between persons with chronic schizophrenia and healthy comparison subjects
TT Nguyen, T Kosciolek, Y Maldonado, RE Daly, AS Martin, D McDonald, ...
Schizophrenia research 204, 23-29, 2019
342019
Gut microbiome and magnetic resonance spectroscopy study of subjects at ultra-high risk for psychosis may support the membrane hypothesis
Y He, T Kosciolek, J Tang, Y Zhou, Z Li, X Ma, Q Zhu, N Yuan, L Yuan, ...
European Psychiatry 53, 37-45, 2018
282018
Gut instinct: Creating scientific theories with online learners
V Pandey, A Amir, J Debelius, ER Hyde, T Kosciolek, R Knight, ...
Proceedings of the 2017 CHI conference on human factors in computing systems …, 2017
172017
Microbiome analyses of blood and tissues suggest cancer diagnostic approach
GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ...
Nature 579 (7800), 567-574, 2020
162020
IL-4Rα blockade by dupilumab decreases Staphylococcus aureus colonization and increases microbial diversity in atopic dermatitis
C Callewaert, T Nakatsuji, R Knight, T Kosciolek, A Vrbanac, P Kotol, ...
Journal of Investigative Dermatology 140 (1), 191-202. e7, 2020
142020
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ...
Nature communications 10 (1), 1-14, 2019
132019
Opportunities and limitations in applying coevolution-derived contacts to protein structure prediction
S Tetchner, T Kosciolek, DT Jones
Bio-Algorithms and Med-Systems 10 (4), 243-254, 2014
112014
The impact of skin care products on skin chemistry and microbiome dynamics
A Bouslimani, R da Silva, T Kosciolek, S Janssen, C Callewaert, A Amir, ...
BMC biology 17 (1), 1-20, 2019
102019
Predictions of backbone dynamics in intrinsically disordered proteins using de novo fragment-based protein structure predictions
T Kosciolek, DWA Buchan, DT Jones
Scientific reports 7 (1), 1-12, 2017
92017
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Articles 1–20