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Fatemeh Zare-Mirakabad
Fatemeh Zare-Mirakabad
Assistant Professor of Computer Science , Amirkabir University of Technology
Verified email at aut.ac.ir - Homepage
Title
Cited by
Cited by
Year
WCOACH: protein complex prediction in weighted PPI networks
M Kouhsar, F Zare-Mirakabad, Y Jamali
Genes & genetic systems 90 (5), 317-324, 2015
312015
Genetic algorithm for dyad pattern finding in DNA sequences
F Zare-Mirakabad, H Ahrabian, M Sadeghi, S Hashemifar, ...
Genes & genetic systems 84 (1), 81-93, 2009
282009
The assessment of efficient representation of drug features using deep learning for drug repositioning
M Moridi, M Ghadirinia, A Sharifi-Zarchi, F Zare-Mirakabad
BMC bioinformatics 20, 1-11, 2019
232019
Transcription factor binding sites prediction based on modified nucleosomes
M Talebzadeh, F Zare-Mirakabad
PLoS One 9 (2), e89226, 2014
192014
New scoring schema for finding motifs in DNA Sequences
F Zare-Mirakabad, H Ahrabian, M Sadeghi, A Nowzari-Dalini, B Goliaei
Bmc Bioinformatics 10, 1-21, 2009
192009
Evolutionary algorithm for RNA secondary structure prediction based on simulated SHAPE data
S Montaseri, M Ganjtabesh, F Zare-Mirakabad
PloS one 11 (11), e0166965, 2016
152016
RNA-RNA interaction prediction using genetic algorithm
S Montaseri, F Zare-Mirakabad, N Moghadam-Charkari
Algorithms for Molecular Biology 9, 1-7, 2014
122014
Protein sequence profile prediction using ProtAlbert transformer
A Behjati, F Zare-Mirakabad, SS Arab, A Nowzari-Dalini
Computational Biology and Chemistry 99, 107717, 2022
10*2022
EIA-CNDP: An exact iterative algorithm for critical node detection problem
J Rezaei, F Zare-Mirakabad, SA MirHassani, SA Marashi
Computers & Operations Research 127, 105138, 2021
82021
Evaluating the accuracy of protein design using native secondary sub-structures
M Movahedi, F Zare-Mirakabad, SS Arab
BMC bioinformatics 17, 1-11, 2016
82016
Inverse RNA folding solution based on multi-objective genetic algorithm and Gibbs sampling method
M Ganjtabesh, F Zare-Mirakabad, A Nowzari-Dalini
EXCLI journal 12, 546, 2013
72013
PSOMF: An algorithm for pattern discovery using PSO
F Zare-Mirakabad, H Ahrabian, M Sadeghi, J Mohammadzadeh, ...
Proceedings of the Third IAPR International Conferences on Pattern …, 2008
62008
Drugrep-kg: Toward learning a unified latent space for drug repurposing using knowledge graphs
Z Ghorbanali, F Zare-Mirakabad, M Akbari, N Salehi, A Masoudi-Nejad
Journal of Chemical Information and Modeling 63 (8), 2532-2545, 2023
52023
The outward shift of clarithromycin binding to the ribosome in mutant Helicobacter pylori strains
N Salehi, B Attaran, F Zare‐Mirakabad, B Ghadiri, M Esmaeili, ...
Helicobacter 25 (6), e12731, 2020
52020
RNA secondary structure prediction based on SHAPE data in helix regions
M Lotfi, F Zare-Mirakabad, S Montaseri
Journal of theoretical biology 380, 178-182, 2015
52015
A stochastic model of DNA double-strand breaks repair throughout the cell cycle
FS Mohseni-Salehi, F Zare-Mirakabad, M Sadeghi, S Ghafouri-Fard
Bulletin of Mathematical Biology 82, 1-36, 2020
42020
RNAComp: A new method for RNA secondary structure alignment
F Zare-Mirakabad, M Sadeghi, H Ahrabian, A Nowzari-Dalini
Match 61 (3), 789, 2009
42009
Draft Genome Sequence of Pseudomonas aeruginosa strain LMG 1272, an atypical white line reaction producer
F Salari, F Zare-Mirakabad, MH Alavi, L Girard, M Ghafari, R De Mot, ...
Microbiology Resource Announcements 9 (7), 10.1128/mra. 01363-19, 2020
32020
Assessing the impact of exact reads on reducing the error rate of read mapping
F Salari, F Zare-Mirakabad, M Sadeghi, H Rokni-Zadeh
BMC bioinformatics 19, 1-15, 2018
32018
Evaluating the quality of SHAPE data simulated by k-mers for RNA structure prediction
S Montaseri, F Zare-Mirakabad, M Ganjtabesh
Journal of Bioinformatics and Computational Biology 15 (06), 1750023, 2017
32017
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