Boyu Zhang
Tytuł
Cytowane przez
Cytowane przez
Rok
A scalable and accurate method for classifying protein–ligand binding geometries using a MapReduce approach
T Estrada, B Zhang, P Cicotti, RS Armen, M Taufer
Computers in biology and medicine 42 (7), 758-771, 2012
312012
Mimir: Memory-efficient and scalable MapReduce for large supercomputing systems
T Gao, Y Guo, B Zhang, P Cicotti, Y Lu, P Balaji, M Taufer
2017 IEEE international parallel and distributed processing symposium (IPDPS …, 2017
282017
Enabling in-situ data analysis for large protein-folding trajectory datasets
B Zhang, T Estrada, P Cicotti, M Taufer
2014 IEEE 28th International Parallel and Distributed Processing Symposium …, 2014
212014
Enhancement of accuracy and efficiency for RNA secondary structure prediction by sequence segmentation and MapReduce
B Zhang, DT Yehdego, KL Johnson, MY Leung, M Taufer
BMC Structural Biology 13 (1), 1-24, 2013
212013
In situ data analytics and indexing of protein trajectories
T Johnston, B Zhang, A Liwo, S Crivelli, M Taufer
Journal of computational chemistry 38 (16), 1419-1430, 2017
122017
On efficiently capturing scientific properties in distributed big data without moving the data: A case study in distributed structural biology using mapreduce
B Zhang, T Estrada, P Cicotti, M Taufer
2013 IEEE 16th International Conference on Computational Science and …, 2013
112013
Reengineering high-throughput molecular datasets for scalable clustering using MapReduce
T Estrada, B Zhang, M Taufer, P Cicotti, R Armen
2012 IEEE 14th International Conference on High Performance Computing and …, 2012
102012
Accurate analysis of large datasets of protein-ligand binding geometries using advanced clustering methods
T Estrada, B Zhang, P Cicotti, R Armen, M Taufer
Computers in Biology and Medicine 42 (7), 758-771, 2012
82012
Secondary Structure Predictions for Long RNA Sequences Based on Inversion Excursions and MapReduce
MYL Daniel Yehdego, Boyu Zhang, Vikram Kodimala, Kyle
Twelfth IEEE International Workshop on High Performance Computational …, 2013
7*2013
Enabling scalable and accurate clustering of distributed ligand geometries on supercomputers
B Zhang, T Estrada, P Cicotti, P Balaji, M Taufer
Parallel Computing 63, 38-60, 2017
52017
Data storage and sharing for the long tail of science
B Zhang, LC Pouchard, PM Smith, A Gasc, BC Pijanowski
2016 New York Scientific Data Summit (NYSDS), 1-9, 2016
52016
Accurate scoring of drug conformations at the extreme scale
B Zhang, T Estrada, P Cicotti, P Balaji, M Taufer
2015 15th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2015
52015
Bandwidth modeling in large distributed systems for big data applications
B Javadi, B Zhang, M Taufer
2014 15th International Conference on Parallel and Distributed Computing …, 2014
52014
Memory-efficient and skew-tolerant MapReduce over MPI for supercomputing systems
T Gao, Y Guo, B Zhang, P Cicotti, Y Lu, P Balaji, M Taufer
IEEE Transactions on Parallel and Distributed Systems 31 (12), 2734-2748, 2020
32020
On the power of combiner optimizations in mapreduce over MPI workflows
T Gao, Y Guo, B Zhang, P Cicotti, Y Lu, P Balaji, M Taufer
2018 IEEE 24th International Conference on Parallel and Distributed Systems …, 2018
32018
Data storage and sharing for the long tail of science
L Pouchard, B Zhang, P Smith, A Gasc, B Pijanowski
New York Scientific Data Summit (NYSDS), 2016
32016
Secondary structure predictions for long RNA sequences based on inversion excursions: preliminary results
DT Yehdego, B Zhang, M Taufer, VKR Kodimala, R Vegesna, ...
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
32012
A modularized MapReduce framework to support RNA secondary structure prediction and analysis workflows
B Zhang, DT Yehdego, KL Johnson, MY Leung, M Taufer
2012 IEEE International Conference on Bioinformatics and Biomedicine …, 2012
32012
In-‐Situ Data Analysis of Protein-‐folding Trajectories
M Taufer, T Johnston, B Zhang, A Liwo, S Crivelli
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016
2016
In-situ Data Analysis of Protein Folding Trajectories
T Johnston, B Zhang, A Liwo, S Crivelli, M Taufer
arXiv preprint arXiv:1510.08789, 2015
2015
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