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Domenico Cozzetto
Tytuł
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A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
9092013
PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments
DT Jones, DWA Buchan, D Cozzetto, M Pontil
Bioinformatics 28 (2), 184-190, 2012
8242012
DISOPRED3: precise disordered region predictions with annotated protein-binding activity
DT Jones, D Cozzetto
Bioinformatics 31 (6), 857-863, 2015
6992015
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 1-19, 2016
3562016
The PMDB protein model database
T Castrignano, PDO De Meo, D Cozzetto, IG Talamo, A Tramontano
Nucleic acids research 34 (suppl_1), D306-D309, 2006
3372006
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
2452019
Evaluation of template‐based models in CASP8 with standard measures
D Cozzetto, A Kryshtafovych, K Fidelis, J Moult, B Rost, A Tramontano
Proteins: Structure, Function, and Bioinformatics 77 (S9), 18-28, 2009
1582009
Assessment of predictions in the model quality assessment category
D Cozzetto, A Kryshtafovych, M Ceriani, A Tramontano
Proteins: Structure, Function, and Bioinformatics 69 (S8), 175-183, 2007
1362007
Evaluation of predictions in the CASP10 model refinement category
T Nugent, D Cozzetto, DT Jones
Proteins: Structure, Function, and Bioinformatics 82, 98-111, 2014
1152014
Critical assessment of protein intrinsic disorder prediction
M Necci, D Piovesan, MT Hoque, I Walsh, S Iqbal, M Vendruscolo, ...
Nature Methods, 2021
1052021
Protein function prediction by massive integration of evolutionary analyses and multiple data sources
D Cozzetto, DWA Buchan, K Bryson, DT Jones
BMC bioinformatics 14, 1-11, 2013
952013
FFPred 3: feature-based function prediction for all Gene Ontology domains
D Cozzetto, F Minneci, H Currant, DT Jones
Scientific reports 6 (1), 31865, 2016
862016
Evaluation of CASP8 model quality predictions
D Cozzetto, A Kryshtafovych, A Tramontano
Proteins: Structure, Function, and Bioinformatics 77 (S9), 157-166, 2009
842009
Evaluation of CASP8 model quality predictions
D Cozzetto, A Kryshtafovych, A Tramontano
Proteins: Structure, Function, and Bioinformatics 77 (S9), 157-166, 2009
842009
Computer-assisted protein domain boundary prediction using the Dom-Pred server
K Bryson, D Cozzetto, DT Jones
Current Protein and Peptide Science 8 (2), 181-188, 2007
692007
Predicting human protein function with multi-task deep neural networks
R Fa, D Cozzetto, C Wan, DT Jones
PloS one 13 (6), e0198216, 2018
662018
FFPred 2.0: improved homology-independent prediction of gene ontology terms for eukaryotic protein sequences
F Minneci, D Piovesan, D Cozzetto, DT Jones
PLoS One 8 (5), e63754, 2013
632013
Relationship between multiple sequence alignments and quality of protein comparative models
D Cozzetto, A Tramontano
Proteins: Structure, Function, and Bioinformatics 58 (1), 151-157, 2005
622005
Interleukin-22 orchestrates a pathological endoplasmic reticulum stress response transcriptional programme in colonic epithelial cells
N Powell, E Pantazi, P Pavlidis, A Tsakmaki, K Li, F Yang, A Parker, C Pin, ...
Gut 69 (3), 578-590, 2020
602020
The contribution of intrinsic disorder prediction to the elucidation of protein function
D Cozzetto, DT Jones
Current opinion in structural biology 23 (3), 467-472, 2013
502013
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