Iddo Friedberg
Iddo Friedberg
Associate Professor of Bioinformatics, Iowa State University
Verified email at iastate.edu - Homepage
Title
Cited by
Cited by
Year
Biopython: freely available Python tools for computational molecular biology and bioinformatics
PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ...
Bioinformatics 25 (11), 1422-1423, 2009
26862009
Protein tyrosine phosphatases in the human genome
A Alonso, J Sasin, N Bottini, I Friedberg, I Friedberg, A Osterman, ...
Cell 117 (6), 699-711, 2004
20722004
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
7732013
A primer on metagenomics
JC Wooley, A Godzik, I Friedberg
PLoS Comput Biol 6 (2), e1000667, 2010
7572010
Automated protein function prediction—the genomic challenge
I Friedberg
Briefings in bioinformatics 7 (3), 225-242, 2006
4482006
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, DD Andrea, R Lepore, ...
Genome Biology 17 (184), 2016
2752016
A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response
S Schwartz, I Friedberg, IV Ivanov, LA Davidson, JS Goldsby, DB Dahl, ...
Genome biology 13 (4), 1-16, 2012
2362012
Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity.
HGF Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG ...
eLife 4, e06416, 2015
1902015
Submitochondrial distribution of three key steroidogenic proteins (steroidogenic acute regulatory protein and cytochrome P450scc and 3β-hydroxysteroid dehydrogenase isomerase …
N Cherradi, MF Rossier, MB Vallotton, R Timberg, I Friedberg, J Orly, ...
Journal of Biological Chemistry 272 (12), 7899-7907, 1997
1821997
Biases in the experimental annotations of protein function and their effect on our understanding of protein function space
AM Schnoes, DC Ream, AW Thorman, PC Babbitt, I Friedberg
PLoS Comput Biol 9 (5), e1003063, 2013
1052013
Host-microbe interactions in the neonatal intestine: role of human milk oligosaccharides
SM Donovan, M Wang, M Li, I Friedberg, SL Schwartz, RS Chapkin
Advances in Nutrition 3 (3), 450S-455S, 2012
1002012
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
882019
Connecting the protein structure universe by using sparse recurring fragments
I Friedberg, A Godzik
Structure 13 (8), 1213-1224, 2005
742005
Protist diversity in a permanently ice-covered Antarctic lake during the polar night transition
S Bielewicz, E Bell, W Kong, I Friedberg, JC Priscu, RM Morgan-Kiss
The ISME journal 5 (9), 1559-1564, 2011
702011
Computational protein function prediction: are we making progress?
A Godzik, M Jambon, I Friedberg
Cellular and molecular life sciences 64 (19), 2505-2511, 2007
652007
Persistently conserved positions in structurally similar, sequence dissimilar proteins: roles in preserving protein fold and function
I Friedberg, H Margalit
Protein Science 11 (2), 350-360, 2002
642002
The COMBREX project: design, methodology, and initial results
BP Anton, YC Chang, P Brown, HP Choi, LL Faller, J Guleria, Z Hu, ...
PLoS Biol 11 (8), e1001638, 2013
612013
Using an alignment of fragment strings for comparing protein structures
I Friedberg, T Harder, R Kolodny, E Sitbon, Z Li, A Godzik
Bioinformatics 23 (2), e219-e224, 2007
542007
Maize GO annotation—methods, evaluation, and review (maize‐GAMER)
K Wimalanathan, I Friedberg, CM Andorf, CJ Lawrence‐Dill
Plant Direct 2 (4), e00052, 2018
512018
JAFA: a protein function annotation meta-server
I Friedberg, T Harder, A Godzik
Nucleic acids research 34 (suppl 2), W379-W381, 2006
512006
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Articles 1–20