| MEME Suite: tools for motif discovery and searching TL Bailey, M Boden, FA Buske, M Frith, CE Grant, L Clementi, J Ren, ... Nucleic acids research 37 (suppl_2), W202-W208, 2009 | 5679 | 2009 |
| The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005 | 3501 | 2005 |
| Antisense transcription in the mammalian transcriptome S Katayama, Y Tomaru, T Kasukawa, K Waki, M Nakanishi, M Nakamura, ... Science 309 (5740), 1564-1566, 2005 | 1776 | 2005 |
| Assessing computational tools for the discovery of transcription factor binding sites M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ... Nature biotechnology 23 (1), 137-144, 2005 | 1504 | 2005 |
| Genome-wide analysis of mammalian promoter architecture and evolution P Carninci, A Sandelin, B Lenhard, S Katayama, K Shimokawa, ... Nature genetics 38 (6), 626-635, 2006 | 1357 | 2006 |
| A promoter-level mammalian expression atlas Fantom Consortium Nature 507 (7493), 462, 2014 | 1142 | 2014 |
| Adaptive seeds tame genomic sequence comparison SM Kie³basa, R Wan, K Sato, P Horton, MC Frith Genome research 21 (3), 487-493, 2011 | 802 | 2011 |
| Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function KC Pang, MC Frith, JS Mattick Trends in genetics 22 (1), 1-5, 2006 | 637 | 2006 |
| Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome T Ravasi, H Suzuki, KC Pang, S Katayama, M Furuno, R Okunishi, ... Genome research 16 (1), 11-19, 2006 | 547 | 2006 |
| Genomic targets of nuclear estrogen receptors R O’Lone, MC Frith, EK Karlsson, U Hansen Molecular endocrinology 18 (8), 1859-1875, 2004 | 496 | 2004 |
| Detection of functional DNA motifs via statistical over‐representation MC Frith, Y Fu, L Yu, JF Chen, U Hansen, Z Weng Nucleic acids research 32 (4), 1372-1381, 2004 | 477 | 2004 |
| Cluster-Buster: Finding dense clusters of motifs in DNA sequences MC Frith, MC Li, Z Weng Nucleic acids research 31 (13), 3666-3668, 2003 | 315 | 2003 |
| Discovering sequence motifs with arbitrary insertions and deletions MC Frith, NFW Saunders, B Kobe, TL Bailey PLoS Comput Biol 4 (5), e1000071, 2008 | 309 | 2008 |
| Detection of cis-element clusters in higher eukaryotic DNA MC Frith, U Hansen, Z Weng Bioinformatics 17 (10), 878-889, 2001 | 297 | 2001 |
| Finding functional sequence elements by multiple local alignment MC Frith, U Hansen, JL Spouge, Z Weng Nucleic acids research 32 (1), 189-200, 2004 | 244 | 2004 |
| A code for transcription initiation in mammalian genomes MC Frith, E Valen, A Krogh, Y Hayashizaki, P Carninci, A Sandelin Genome research 18 (1), 1-12, 2008 | 227 | 2008 |
| The amazing complexity of the human transcriptome. MC Frith, M Pheasant, JS Mattick European journal of human genetics: EJHG 13 (8), 894-897, 2005 | 223 | 2005 |
| The abundance of short proteins in the mammalian proteome MC Frith, AR Forrest, E Nourbakhsh, KC Pang, C Kai, J Kawai, P Carninci, ... PLoS Genet 2 (4), e52, 2006 | 213 | 2006 |
| Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs N Maeda, T Kasukawa, R Oyama, J Gough, M Frith, PG Engström, ... PLoS Genet 2 (4), e62, 2006 | 197 | 2006 |
| Parameters for accurate genome alignment MC Frith, M Hamada, P Horton BMC bioinformatics 11 (1), 1-14, 2010 | 191 | 2010 |
